Project 4303: B. L. Long-Fox. 2022. Phylogenetic controls on shell morphology in the chemosymbiotic Lucinidae (Bivalvia). Ph.D Thesis, South Dakota Mines. none:1-253.
Abstract
Lucinidae are the most specious family of chemosymbiotic bivalves and have a fossil record extending to the late Silurian. The relationship between lucinid hosts and endosymbionts is inferred to have existed since at least the Jurassic based on habitat associations (occurrence at hydrocarbon seeps). Our understanding of the evolutionary relationships among lucinids and their relationships with endosymbionts is limited, however, as modern lucinid phylogenies are primarily derived from sequence data and are, therefore, limited to extant taxa. In order to fully understand the rich evolutionary history of lucinids, fossil taxa must be incorporated into analyses and, thus, the phylogenetic signal of conchological traits needs to be tested. This dissertation examines how lucinid shell morphology, as described by categorical character states and geometric morphometrics, corresponds with molecular phylogenies and endosymbiont diversity at several scales. Chapter 1 examines congruence and resolution in molecular tress versus trees based on categorical shell character states. A matrix of 58 shell characters and 52 species of lucinids from the Neogene and Quaternary of the Western Atlantic was used to construct morphological cladograms that were compared to published molecular phylogenies. Results indicate that cladograms based on shell characters are often congruent with molecular phylogenies at the genus-level, but are poorly resolved at more basal nodes. Nonetheless, the inclusion of shell characters provides a means to include extinct taxa in phylogenetic analyses. Chapter 2 further examines morphological and phylogenetic relationships using geometric morphometric analyses of shell interiors of eight lucinid species to test for phylogenetic signal in shape based on a landmark configuration focused on adductor muscle scars and shell outline. Results confirm a strong phylogenetic signal in landmark data, however, this signal does not represent shape variation for any particular morphologic feature(s). Finally, in Chapter 3, population-level host molecular phylogeny, host shell morphology (geometric morphometrics), and gill-associated bacterial relative abundances are compared in Ctena n. sp. occurring in anchialine ponds and coastal lagoons of San Salvador Island, the Bahamas as well as in Ctena orbiculata from coastal Florida and lagoons of San Salvador Island, the Bahamas. No significant differences in sequence data among populations were found, although there were differences in both host shell morphology and gill-associated bacterial relative abundance by locality, whereas host shell morphology and gill-associated bacterial relative abundance were not significantly correlated. This dissertation provides 1) a new phylogeny for lucinids incorporating morphological characters, 2) the first used of COI in a molecular phylogeny for the family, 3) the first test for phylogenetic signal in lucinid morphology, 4) the first test of a relationship between host morphology and gill-associated bacterial relative abundance, and 5) a description of and justification for a new lucinid species of Ctena.Read the article »
Project DOI: 10.7934/P4303, http://dx.doi.org/10.7934/P4303
This project contains | Matrices |
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Download Project SDD File | Total scored cells: 2807 Total media associated with cells: 3 Total labels associated with cell media: 0 |
Characters | |
Total characters: 58 Total characters with associated media: 0 Total characters with media with labels: 0 Total character states: 146 Total character states with associated media: 59 Total character states with media with labels:0 Total unordered/ordered characters:58/0 |
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MorphoBank Project 4303
MorphoBank Project 4303
- Creation Date:
05 July 2022 - Publication Date:
28 September 2023 - Project views: 11221
- Media downloads: 1
- Matrix downloads: 5
This research
supported by
Authors' Institutions
- South Dakota School of Mines and Technology Museum of Geology, Rapid City
Members
member name | taxa | specimens | media | media notes | chars | character
| cell scorings (scored, NPA, "-") | cell
| rules | ||||||||||||||
Brooke Long-Fox Project Administrator | 54 | 57 | 116 | 19 | 58 | 0 | 58 | 59 | 0 | 2807 (2807, 0, 0) | 0 | 0 | 3 | 0 | 0 |
Taxonomic Overview for Matrix 'M28836' (54 Taxa)
taxon | unscored cells |
scored cells |
no cell support |
NPA cells |
"-" cells | cell images | labels on cell images |
member access |
[1] Afrolucina lens Last Modified in 08/04/22 | 5 | 53 | 53 | 0 | 0 | 0 | 0 | 1 |
[2] Anodontia alba Last Modified in 08/04/22 | 7 | 51 | 49 | 0 | 0 | 2 | 0 | 1 |
[3] † Armimiltha disciformis Last Modified in 08/04/22 | 8 | 50 | 50 | 0 | 0 | 0 | 0 | 1 |
[4] Callucina keenae Last Modified in 08/04/22 | 2 | 56 | 56 | 0 | 0 | 0 | 0 | 1 |
[5] Cardiolucina rehderi Last Modified in 08/04/22 | 2 | 56 | 56 | 0 | 0 | 0 | 0 | 1 |
[6] Cavilinga blanda Last Modified in 08/04/22 | 8 | 50 | 50 | 0 | 0 | 0 | 0 | 1 |
[7] Clathrolucina costata Last Modified in 07/05/22 | 2 | 56 | 56 | 0 | 0 | 0 | 0 | 1 |
[8] Codakia orbicularis Last Modified in 08/04/22 | 2 | 56 | 56 | 0 | 0 | 0 | 0 | 1 |
[9] Ctena imbricatula Last Modified in 08/04/22 | 2 | 56 | 56 | 0 | 0 | 0 | 0 | 1 |
[10] Ctena orbiculata Last Modified in 08/04/22 | 2 | 56 | 56 | 0 | 0 | 0 | 0 | 1 |
[11] Divalinga quadrisulcata Last Modified in 08/04/22 | 6 | 52 | 52 | 0 | 0 | 0 | 0 | 1 |
[12] Divalinga weberi Last Modified in 08/04/22 | 13 | 45 | 45 | 0 | 0 | 0 | 0 | 1 |
[13] † Divaricella chipolana Last Modified in 08/04/22 | 9 | 49 | 49 | 0 | 0 | 0 | 0 | 1 |
[14] Divaricella dentata Last Modified in 08/04/22 | 6 | 52 | 52 | 0 | 0 | 0 | 0 | 1 |
[15] † Eomiltha pandata Last Modified in 08/04/22 | 10 | 48 | 48 | 0 | 0 | 0 | 0 | 1 |
[16] † Eomiltha scolaroi Last Modified in 07/05/22 | 10 | 48 | 48 | 0 | 0 | 0 | 0 | 1 |
[17] Epicodakia filiata Last Modified in 08/04/22 | 3 | 55 | 55 | 0 | 0 | 0 | 0 | 1 |
[18] Epicodakia pectinata Last Modified in 08/04/22 | 3 | 55 | 55 | 0 | 0 | 0 | 0 | 1 |
[19] Eulopia sagrinata Last Modified in 08/04/22 | 0 | 58 | 58 | 0 | 0 | 0 | 0 | 1 |
[20] Ferrocina cubana Last Modified in 08/04/22 | 1 | 57 | 57 | 0 | 0 | 0 | 0 | 1 |
[21] Ferrocina garciai Last Modified in 08/04/22 | 3 | 55 | 55 | 0 | 0 | 0 | 0 | 1 |
[22] Graecina colombiensis Last Modified in 08/04/22 | 5 | 53 | 53 | 0 | 0 | 0 | 0 | 1 |
[23] Jorgenia compressa Last Modified in 07/05/22 | 6 | 52 | 52 | 0 | 0 | 0 | 0 | 1 |
[24] Jorgenia louisiana Last Modified in 07/05/22 | 5 | 53 | 53 | 0 | 0 | 0 | 0 | 1 |
[25] Lucina aurantia Last Modified in 08/04/22 | 3 | 55 | 55 | 0 | 0 | 0 | 0 | 1 |
[26] † Lucina glenni Last Modified in 08/04/22 | 12 | 46 | 46 | 0 | 0 | 0 | 0 | 1 |
[27] Lucina pensylvanica Last Modified in 08/04/22 | 3 | 55 | 55 | 0 | 0 | 0 | 0 | 1 |
[28] Lucina roquesana Last Modified in 08/04/22 | 3 | 55 | 55 | 0 | 0 | 0 | 0 | 1 |
[29] † Lucinisca calhounensis Last Modified in 07/05/22 | 6 | 52 | 52 | 0 | 0 | 0 | 0 | 1 |
[30] Lucinisca nassula Last Modified in 07/05/22 | 2 | 56 | 56 | 0 | 0 | 0 | 0 | 1 |
[31] Lucinisca muricata Last Modified in 07/05/22 | 2 | 56 | 56 | 0 | 0 | 0 | 0 | 1 |
[32] † Lucinoma bermudensis Last Modified in 08/04/22 | 6 | 52 | 52 | 0 | 0 | 0 | 0 | 1 |
[33] † Miltha caloosaensis Last Modified in 08/04/22 | 10 | 48 | 48 | 0 | 0 | 0 | 0 | 1 |
[34] † Miltha carmenae Last Modified in 08/04/22 | 10 | 48 | 47 | 0 | 0 | 1 | 0 | 1 |
[35] Miltha childrenae Last Modified in 08/04/22 | 8 | 50 | 50 | 0 | 0 | 0 | 0 | 1 |
[36] † Miltha chipolana Last Modified in 08/04/22 | 11 | 47 | 47 | 0 | 0 | 0 | 0 | 1 |
[37] Mytrina pristiphora Last Modified in 07/05/22 | 5 | 53 | 53 | 0 | 0 | 0 | 0 | 1 |
[38] Neophysema phenax Last Modified in 07/05/22 | 6 | 52 | 52 | 0 | 0 | 0 | 0 | 1 |
[39] Parvilucina crenella Last Modified in 08/04/22 | 2 | 56 | 56 | 0 | 0 | 0 | 0 | 1 |
[40] Parvilucina pectinella Last Modified in 08/04/22 | 4 | 54 | 54 | 0 | 0 | 0 | 0 | 1 |
[41] † Parvilucina sphaeriolus Last Modified in 08/04/22 | 13 | 45 | 45 | 0 | 0 | 0 | 0 | 1 |
[42] † Pegophysema santarosana Last Modified in 07/05/22 | 11 | 47 | 47 | 0 | 0 | 0 | 0 | 1 |
[43] Pegophysema schrammi Last Modified in 07/05/22 | 6 | 52 | 52 | 0 | 0 | 0 | 0 | 1 |
[44] Phacoides pectinatus Last Modified in 08/04/22 | 3 | 55 | 55 | 0 | 0 | 0 | 0 | 1 |
[45] Pleurolucina amabilis Last Modified in 07/05/22 | 5 | 53 | 53 | 0 | 0 | 0 | 0 | 1 |
[46] Pleurolucina hendersoni Last Modified in 07/05/22 | 6 | 52 | 52 | 0 | 0 | 0 | 0 | 1 |
[47] Pleurolucina leucoyma Last Modified in 07/05/22 | 3 | 55 | 55 | 0 | 0 | 0 | 0 | 1 |
[48] Pleurolucina sombrerensis Last Modified in 07/05/22 | 6 | 52 | 52 | 0 | 0 | 0 | 0 | 1 |
[49] Radiolucina amianta Last Modified in 08/04/22 | 3 | 55 | 55 | 0 | 0 | 0 | 0 | 1 |
[50] † Radiolucina waccamawensis Last Modified in 08/04/22 | 12 | 46 | 46 | 0 | 0 | 0 | 0 | 1 |
[51] † Stewartia anodonta Last Modified in 08/04/22 | 12 | 46 | 46 | 0 | 0 | 0 | 0 | 1 |
[52] Stewartia floridana Last Modified in 08/04/22 | 5 | 53 | 53 | 0 | 0 | 0 | 0 | 1 |
[53] Parathyasira equalis Last Modified in 08/04/22 | 14 | 44 | 44 | 0 | 0 | 0 | 0 | 1 |
[54] Thyasira biplicata Last Modified in 08/04/22 | 13 | 45 | 45 | 0 | 0 | 0 | 0 | 1 |
Project views
type | number of views | Individual items viewed (where applicable) |
Total project views | 11221 | |
Project overview | 255 | |
Folio views | 6 | Folio list (4 views); (2 views); |
Matrix views | 131 | Matrix landing page (120 views); Lucinid Shell Matrix (11 views); |
Media views | 6118 | Media search (372 views); M862443 (50 views); M894529 (54 views); M894565 (56 views); M845223 (57 views); M894550 (51 views); M894507 (63 views); M862405 (59 views); M894555 (55 views); M894526 (61 views); M894511 (52 views); M894518 (53 views); M862421 (56 views); M845220 (55 views); M862440 (45 views); M894528 (51 views); M894537 (53 views); M894500 (46 views); M894513 (45 views); M862400 (59 views); M862425 (53 views); M894530 (45 views); M862417 (59 views); M845219 (54 views); M894532 (45 views); M862427 (59 views); M862442 (45 views); M894563 (55 views); M862419 (55 views); M862414 (55 views); M862403 (54 views); M862416 (52 views); M862447 (43 views); M845222 (53 views); M862404 (55 views); M894533 (48 views); M894534 (49 views); M894516 (50 views); M894514 (49 views); M862428 (55 views); M894520 (46 views); M894501 (46 views); M862437 (56 views); M862396 (54 views); M894503 (48 views); M862420 (52 views); M862422 (53 views); M894548 (45 views); M862409 (52 views); M862413 (52 views); M894527 (51 views); M862397 (52 views); M894506 (50 views); M862430 (56 views); M894524 (44 views); M862429 (55 views); M894509 (51 views); M862402 (54 views); M862445 (55 views); M862424 (55 views); M862406 (54 views); M862446 (50 views); M894531 (49 views); M862435 (54 views); M894553 (48 views); M862436 (54 views); M862398 (51 views); M862432 (55 views); M862444 (56 views); M894505 (54 views); M862439 (52 views); M862411 (52 views); M862434 (50 views); M845221 (51 views); M862415 (52 views); M862441 (46 views); M894564 (50 views); M894522 (47 views); M862408 (52 views); M862412 (54 views); M862423 (53 views); M862426 (53 views); M862433 (50 views); M862448 (48 views); M894504 (45 views); M894508 (48 views); M894510 (45 views); M894512 (52 views); M894535 (44 views); M894557 (48 views); M894560 (48 views); M862399 (52 views); M862401 (51 views); M862407 (51 views); M862410 (57 views); M862418 (51 views); M862431 (52 views); M862438 (52 views); M894502 (47 views); M894562 (48 views); M894566 (49 views); M894570 (36 views); M894571 (36 views); M894572 (35 views); M894573 (35 views); M894574 (42 views); M894577 (35 views); M894579 (36 views); M894581 (41 views); M894583 (41 views); M894584 (36 views); M894585 (36 views); M894586 (36 views); M894587 (36 views); M894588 (36 views); M894589 (34 views); M894590 (39 views); |
Documents list | 102 | |
Bibliography | 100 | |
Views for media list | 137 | |
Taxon list | 947 | |
Specimen list | 3425 |
Project downloads
type | number of downloads | Individual items downloaded (where applicable) |
Total downloads from project | 6 | |
Matrix downloads | 5 | Lucinid Shell Matrix (5 downloads); |
Media downloads | 1 | M894526 (1 download); |