Project 2491: M. A. O’Leary, K. Alphonse, A. H. Mariangeles, D. Cavaliere, A. Cirranello, T. G. Dietterich, M. Julius, S. Kaufman, E. Law, M. Passarotti, A. Reft, J. Robalino, N. B. Simmons, S. Y. Smith, D. W. Stevenson, E. Theriot, P. M. Velazco, R. L. Walls, M. Yu, M. Daly. 2018. Crowds Replicate Performance of Scientific Experts Scoring Phylogenetic Matrices of Phenotypes. Systematic Biology. 67 (1):49-60.
Specimen: Ameiurus catus (Linnaeus 1758) (unvouchered)
View: Lateral

Abstract

Scientists building the Tree of Life face an overwhelming challenge to categorize phenotypes (e.g., anatomy, physiology) from millions of living and fossil species. This biodiversity challenge far outstrips the capacities of trained scientific experts. Here we explore whether crowdsourcing can be used to collect matrix data on a large scale with the participation of the non-expert students, or “citizen scientists.” Crowdsourcing, or data collection by non-experts, frequently via the internet, has enabled scientists to tackle some large-scale data collection challenges too massive for individuals or scientific teams alone. The quality of work by non-expert crowds is, however, often questioned and little data has been collected on how such crowds perform on complex tasks such as phylogenetic character coding. We studied a crowd of over 600 non-experts, and found that they could use images to identify anatomical similarity (hypotheses of homology) with an average accuracy of 82% compared to scores provided by experts in the field. This performance pattern held across the Tree of Life, from protists to vertebrates. We introduce a procedure that predicts the difficulty of each character and that can be used to assign harder characters to experts and easier characters to a non-expert crowd for scoring. We test this procedure in a controlled experiment comparing crowd scores to those of experts and show that crowds can produce matrices with over 90% of cells scored correctly while reducing the number of cells to be scored by experts by 50%. Preparation time, including image collection and processing, for a crowdsourcing experiment is significant, and does not currently save time of scientific experts overall. However, if innovations in automation or robotics can reduce such effort, then large-scale implementation of our method could greatly increase the collective scientific knowledge of species phenotypes for phylogenetic tree building. For the field of crowdsourcing, we provide a rare study with ground truth, or an experimental control that many studies lack, and contribute new methods on how to coordinate the work of experts and non-experts. We show that there are important instances in which crowd consensus is not a good proxy for correctness.


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Article DOI: 10.1093/sysbio/syx052

Project DOI: 10.7934/P2491, http://dx.doi.org/10.7934/P2491
This project containsMatrices
  • 448 Media
  • 1 Matrix
  • 1 Document
  • 20 Taxa
  • 72 Specimens
  • 7 Characters
Total size of project's media files: 2.67G

Download Project SDD File
Total scored cells: 117
Total media associated with cells: 104
Total labels associated with cell media: 0
Characters
Total characters: 7
Total characters with associated media: 6
Total characters with media with labels: 0
Total character states: 14
Total character states with associated media: 14
Total character states with media with labels:0
Total unordered/ordered characters:7/0
Currently Viewing:
MorphoBank Project 2491

    This research
    supported by

    Authors' Institutions

    • Ohio State University

    • Oregon State University

    • University of Arizona

    • University of Michigan

    • University of Texas at Austin

    • University of Waterloo

    • American Museum of Natural History

    • Drexel University

    • Kenx Technology Inc

    • New York Botanical Garden

    • St. Cloud State University

    • Stony Brook University

    • Whirl-i-gig

    • College of William and Mary

    • Howard Hughes Medical Institute



    Members

    member name taxa specimens media chars character
    media
    labels
    cell scorings
    (scored, NPA, "-")
    cell
    medialabels
    rules
    Mariangeles Arce H.
    Project Administrator
    20724487200117
    (109, 0, 8)
    10402
    Maureen O'Leary
    Full membership
    0000000
    (0, 0, 0)
    000


    Taxonomic Overview for Matrix 'M24107' (20 Taxa)

    taxon unscored
    cells
    scored
    cells
    no cell
    support
    NPA
    cells
    "-" cellscell images labels on
    cell images
    member
    access
    [1] Ictalurus furcatus
    Last Modified in 07/06/16
    06301402
    [2] Ictalurus balsanus
    Last Modified in 07/06/16
    07000702
    [3] Ictalurus punctatus
    Last Modified in 07/06/16
    06001702
    [4] Ictalurus meridionalis
    Last Modified in 07/06/16
    15001702
    [5] Ameiurus catus
    Last Modified in 07/06/16
    07000702
    [6] Ameiurus serracanthus
    Last Modified in 07/06/16
    07000902
    [7] Ameiurus brunneus
    Last Modified in 07/06/16
    07000802
    [8] Ameiurus platycephalus
    Last Modified in 07/06/16
    07000702
    [9] Ameiurus natalis
    Last Modified in 07/06/16
    07000702
    [10] Ameiurus melas
    Last Modified in 07/06/16
    07000702
    [11] Ameiurus nebulosus
    Last Modified in 07/06/16
    07000702
    [12] Noturus flavus
    Last Modified in 07/06/16
    07400402
    [13] Noturus stigmosus
    Last Modified in 07/06/16
    06001702
    [14] Prietella phreatophila
    Last Modified in 07/06/16
    04303202
    [15] Pylodictis olivaris
    Last Modified in 07/06/16
    16500202
    [16] Satan eurystomus
    Last Modified in 07/06/16
    52100102
    [17] Cranoglanis bouderius
    Last Modified in 07/06/16
    61000102
    [18] † Ictalurus countermani
    Last Modified in 07/06/16
    43000302
    [19] † Ictalurus hazenensis
    Last Modified in 07/06/16
    34000402
    [20] † Hypsidoris farsonensis
    Last Modified in 07/06/16
    33001302


    Project views

    type number of views Individual items viewed (where applicable)
    Total project views123073
    Project overview2633
    Matrix views1492Matrix landing page (1148 views); Ictaluridae+Cranoglanididae (344 views);
    Media views76520Media search (3898 views); M424783 (476 views); M424801 (401 views); M424739 (470 views); M424769 (502 views); M424784 (404 views); M424740 (491 views); M424805 (464 views); M424834 (384 views); M424795 (412 views); M424747 (483 views); M424746 (499 views); M424797 (418 views); M424756 (491 views); M424758 (476 views); M424824 (384 views); M424754 (524 views); M424827 (416 views); M424791 (393 views); M424793 (417 views); M424836 (347 views); M424776 (473 views); M424799 (417 views); M424738 (513 views); M424759 (503 views); M424743 (470 views); M424803 (383 views); M424786 (384 views); M424826 (359 views); M424813 (401 views); M424804 (361 views); M424772 (447 views); M424767 (477 views); M424781 (486 views); M424785 (416 views); M424760 (467 views); M424810 (417 views); M424779 (513 views); M424818 (414 views); M424755 (460 views); M424814 (409 views); M424763 (527 views); M424751 (461 views); M424764 (488 views); M424796 (421 views); M424820 (353 views); M424752 (475 views); M424778 (430 views); M424833 (376 views); M424748 (475 views); M424766 (483 views); M424816 (366 views); M424745 (530 views); M424830 (400 views); M424744 (489 views); M424780 (464 views); M424782 (456 views); M424821 (399 views); M424775 (469 views); M424822 (419 views); M424790 (386 views); M424807 (391 views); M424829 (386 views); M424811 (370 views); M424768 (480 views); M424773 (514 views); M424809 (396 views); M424741 (510 views); M424750 (490 views); M424825 (417 views); M424770 (490 views); M424832 (416 views); M424749 (476 views); M424798 (389 views); M424787 (400 views); M424819 (384 views); M424788 (389 views); M424771 (476 views); M424815 (378 views); M424794 (388 views); M424753 (475 views); M424765 (478 views); M424774 (541 views); M424828 (390 views); M424757 (491 views); M424800 (376 views); M424823 (381 views); M424835 (409 views); M424742 (473 views); M424806 (613 views); M424812 (380 views); M424846 (206 views); M424848 (219 views); M424944 (228 views); M424913 (375 views); M424872 (223 views); M424918 (225 views); M424942 (218 views); M424914 (302 views); M424886 (220 views); M424950 (218 views); M424883 (236 views); M424951 (235 views); M424865 (222 views); M424923 (216 views); M424853 (228 views); M424930 (204 views); M424954 (228 views); M424932 (235 views); M424885 (237 views); M424890 (222 views); M424869 (227 views); M424845 (231 views); M424936 (229 views); M424907 (227 views); M424863 (231 views); M424903 (222 views); M424939 (229 views); M424896 (236 views); M424880 (232 views); M424891 (233 views); M424881 (232 views); M424858 (203 views); M424908 (228 views); M424910 (221 views); M424943 (238 views); M424919 (234 views); M424882 (205 views); M424901 (234 views); M424955 (223 views); M424842 (290 views); M424888 (216 views); M424898 (221 views); M424902 (231 views); M424946 (220 views); M424847 (218 views); M424927 (227 views); M424935 (230 views); M424893 (225 views); M424920 (230 views); M424878 (220 views); M424952 (207 views); M424949 (228 views); M424871 (366 views); M424915 (259 views); M424852 (229 views); M424909 (230 views); M424899 (231 views); M424876 (229 views); M424929 (219 views); M424906 (226 views); M424934 (230 views); M424850 (210 views); M424912 (239 views); M424855 (227 views); M424843 (216 views); M424777 (455 views); M424802 (347 views); M424884 (211 views); M424959 (224 views); M424905 (206 views); M424864 (233 views); M424856 (214 views); M424897 (213 views); M424838 (233 views); M424894 (215 views); M424874 (221 views); M424956 (225 views); M424866 (262 views); M424859 (220 views); M424875 (222 views); M424868 (212 views); M424937 (222 views); M424844 (220 views); M424867 (209 views); M424961 (227 views); M424938 (229 views); M424947 (235 views); M424960 (232 views); M424862 (239 views); M424945 (229 views); M424889 (226 views); M424928 (200 views); M424841 (285 views); M424900 (214 views); M424931 (203 views); M424877 (223 views); M424870 (203 views); M424924 (227 views); M424860 (210 views); M424861 (213 views); M424895 (229 views); M424839 (315 views); M424873 (212 views); M424941 (228 views); M424911 (206 views); M424953 (229 views); M424837 (201 views); M424849 (222 views); M424887 (219 views); M424926 (225 views); M424940 (228 views); M424948 (225 views); M424854 (224 views); M424933 (207 views); M424857 (200 views); M424840 (347 views); M424851 (230 views); M424879 (227 views); M424921 (272 views); M424917 (207 views); M424957 (237 views); M424925 (222 views); M424892 (217 views); M424922 (231 views); M424958 (223 views); M424737 (520 views); M424792 (402 views); M424789 (396 views); M424831 (420 views); M424762 (490 views); M424808 (363 views); M424817 (382 views); M424761 (515 views); M424916 (225 views); M424904 (240 views); M425017 (2 views); M425072 (3 views);
    Documents list1032
    Views for media list3670
    Specimen list31309
    Taxon list5568
    Bibliography849




    Project downloads

    type number of downloads Individual items downloaded (where applicable)
    Total downloads from project290
    Project downloads285
    Media downloads1M425072 (1 download);
    Document downloads1Supplementary Material (1 download);
    Matrix downloads3Ictaluridae+Cranoglanididae (3 downloads);