Project 2463: M. A. O’Leary, K. Alphonse, A. H. Mariangeles, D. Cavaliere, A. Cirranello, T. G. Dietterich, M. Julius, S. Kaufman, E. Law, M. Passarotti, A. Reft, J. Robalino, N. B. Simmons, S. Y. Smith, D. W. Stevenson, E. Theriot, P. M. Velazco, R. L. Walls, M. Yu, M. Daly. 2018. Crowds Replicate Performance of Scientific Experts Scoring Phylogenetic Matrices of Phenotypes. Systematic Biology. 67 (1):49-60.
Specimen: Lilium speciosum Andr.
View: flower

Abstract

Scientists building the Tree of Life face an overwhelming challenge to categorize phenotypes (e.g., anatomy, physiology) from millions of living and fossil species. This biodiversity challenge far outstrips the capacities of trained scientific experts. Here we explore whether crowdsourcing can be used to collect matrix data on a large scale with the participation of the non-expert students, or “citizen scientists.” Crowdsourcing, or data collection by non-experts, frequently via the internet, has enabled scientists to tackle some large-scale data collection challenges too massive for individuals or scientific teams alone. The quality of work by non-expert crowds is, however, often questioned and little data has been collected on how such crowds perform on complex tasks such as phylogenetic character coding. We studied a crowd of over 600 non-experts, and found that they could use images to identify anatomical similarity (hypotheses of homology) with an average accuracy of 82% compared to scores provided by experts in the field. This performance pattern held across the Tree of Life, from protists to vertebrates. We introduce a procedure that predicts the difficulty of each character and that can be used to assign harder characters to experts and easier characters to a non-expert crowd for scoring. We test this procedure in a controlled experiment comparing crowd scores to those of experts and show that crowds can produce matrices with over 90% of cells scored correctly while reducing the number of cells to be scored by experts by 50%. Preparation time, including image collection and processing, for a crowdsourcing experiment is significant, and does not currently save time of scientific experts overall. However, if innovations in automation or robotics can reduce such effort, then large-scale implementation of our method could greatly increase the collective scientific knowledge of species phenotypes for phylogenetic tree building. For the field of crowdsourcing, we provide a rare study with ground truth, or an experimental control that many studies lack, and contribute new methods on how to coordinate the work of experts and non-experts. We show that there are important instances in which crowd consensus is not a good proxy for correctness.


Read the article »

Article DOI: 10.1093/sysbio/syx052

Project DOI: 10.7934/P2463, http://dx.doi.org/10.7934/P2463
This project containsMatrices
  • 254 Media
  • 1 Matrix
  • 1 Document
  • 20 Taxa
  • 56 Specimens
  • 5 Characters
Total size of project's media files: 1.1G

Download Project SDD File
Total scored cells: 98
Total media associated with cells: 100
Total labels associated with cell media: 3
Characters
Total characters: 5
Total characters with associated media: 5
Total characters with media with labels: 0
Total character states: 15
Total character states with associated media: 15
Total character states with media with labels:0
Total unordered/ordered characters:5/0
Currently Viewing:
MorphoBank Project 2463

    This research
    supported by

    Authors' Institutions

    • Ohio State University

    • Oregon State University

    • University of Arizona

    • University of Michigan

    • University of Texas at Austin

    • University of Waterloo

    • American Museum of Natural History

    • Drexel University

    • Kenx Technology Inc

    • New York Botanical Garden

    • St. Cloud State University

    • Stony Brook University

    • Whirl-i-gig

    • College of William and Mary

    • Howard Hughes Medical Institute



    Members

    member name taxa specimens media chars character
    media
    labels
    cell scorings
    (scored, NPA, "-")
    cell
    medialabels
    rules
    Ramona Walls
    Project Administrator
    2056254520098
    (98, 0, 0)
    10030
    Dario Cavaliere
    Full membership
    0000000
    (0, 0, 0)
    000
    Maureen O'Leary
    Full membership
    0000000
    (0, 0, 0)
    000
    Selena Smith
    Observer
    0000000
    (0, 0, 0)
    000
    Dennis Stevenson
    Full membership
    0000000
    (0, 0, 0)
    000


    Taxonomic Overview for Matrix 'M24092' (20 Taxa)

    taxon unscored
    cells
    scored
    cells
    no cell
    support
    NPA
    cells
    "-" cellscell images labels on
    cell images
    member
    access
    [1] Lapageria rosea
    Last Modified in 06/29/16
    05000535
    [2] Drymophila moorei
    Last Modified in 06/29/16
    05000505
    [3] Alstroemeria pelegrina
    Last Modified in 06/29/16
    14000505
    [4] Schelhammera multiflora
    Last Modified in 06/29/16
    05000505
    [5] Drymophila cyanocarpa
    Last Modified in 06/29/16
    05000505
    [6] Paris quadrifolia
    Last Modified in 06/29/16
    05000505
    [7] Tricyrtis formosana
    Last Modified in 06/29/16
    05000505
    [8] Erythronium japonicum
    Last Modified in 06/29/16
    14000505
    [9] Alstroemeria aurentiaca
    Last Modified in 06/29/16
    05000505
    [10] Calochortus apiculatus
    Last Modified in 06/29/16
    05000505
    [11] Clintonia borealis
    Last Modified in 06/29/16
    05000505
    [12] Erythronium americanum
    Last Modified in 06/29/16
    05000505
    [13] Heterosmilax gaudichaudiana
    Last Modified in 06/29/16
    05000505
    [14] Lilium martagon
    Last Modified in 06/29/16
    05000505
    [15] Lilium speciosum
    Last Modified in 06/29/16
    05000505
    [16] Philesia magellanica
    Last Modified in 06/29/16
    05000505
    [17] Ripogonum album
    Last Modified in 06/29/16
    05000505
    [18] Smilax herbacea
    Last Modified in 06/29/16
    05000505
    [19] Streptopus streptopoides japonica
    Last Modified in 06/29/16
    05000505
    [20] Veratrum album oxysepalum
    Last Modified in 06/29/16
    05000505


    Project views

    type number of views Individual items viewed (where applicable)
    Total project views119402
    Media views74673Media search (3818 views); M424055 (446 views); M424091 (345 views); M424087 (394 views); M424114 (358 views); M424092 (339 views); M424037 (449 views); M424068 (379 views); M424089 (364 views); M424029 (462 views); M424101 (351 views); M424116 (348 views); M424097 (486 views); M424079 (347 views); M424113 (421 views); M424043 (449 views); M424027 (430 views); M424086 (363 views); M424080 (367 views); M424082 (365 views); M424023 (465 views); M424038 (432 views); M424036 (453 views); M424026 (418 views); M424022 (445 views); M424076 (373 views); M424024 (445 views); M424093 (359 views); M424032 (423 views); M424081 (335 views); M424108 (378 views); M424053 (440 views); M424104 (345 views); M424057 (433 views); M424070 (369 views); M424054 (461 views); M424039 (423 views); M424109 (400 views); M424105 (362 views); M424044 (458 views); M424117 (336 views); M424056 (431 views); M424085 (529 views); M424040 (448 views); M424106 (364 views); M424096 (361 views); M424107 (369 views); M424084 (369 views); M424034 (419 views); M424062 (368 views); M424073 (464 views); M424061 (398 views); M424050 (423 views); M424025 (483 views); M424120 (384 views); M424094 (356 views); M424065 (400 views); M424066 (407 views); M424111 (350 views); M424095 (499 views); M424030 (456 views); M424045 (499 views); M424051 (452 views); M424067 (410 views); M424028 (425 views); M424041 (448 views); M424103 (371 views); M424069 (392 views); M424046 (537 views); M424098 (387 views); M424118 (338 views); M424072 (402 views); M424063 (406 views); M424048 (441 views); M424102 (355 views); M424052 (456 views); M424047 (460 views); M424042 (433 views); M424099 (374 views); M424077 (362 views); M424090 (424 views); M424112 (364 views); M424074 (374 views); M424121 (507 views); M424075 (368 views); M424115 (372 views); M424110 (373 views); M424071 (348 views); M424033 (429 views); M424035 (455 views); M424083 (365 views); M424088 (369 views); M424064 (414 views); M424215 (351 views); M424177 (205 views); M424157 (235 views); M424176 (234 views); M424189 (225 views); M424058 (455 views); M424245 (225 views); M424135 (237 views); M424140 (238 views); M424199 (231 views); M424168 (404 views); M424155 (247 views); M424219 (243 views); M424196 (234 views); M424214 (248 views); M424239 (228 views); M424031 (449 views); M424078 (362 views); M424049 (455 views); M424123 (240 views); M424198 (354 views); M424156 (230 views); M424205 (252 views); M424241 (217 views); M424142 (231 views); M424174 (212 views); M424166 (231 views); M424235 (247 views); M424127 (227 views); M424206 (231 views); M424175 (239 views); M424237 (224 views); M424179 (225 views); M424183 (230 views); M424218 (248 views); M424232 (223 views); M424150 (233 views); M424170 (243 views); M424213 (236 views); M424216 (336 views); M424129 (241 views); M424178 (236 views); M424143 (233 views); M424185 (363 views); M424191 (233 views); M424195 (235 views); M424242 (235 views); M424246 (223 views); M424172 (243 views); M424221 (232 views); M424186 (257 views); M424148 (238 views); M424152 (243 views); M424229 (236 views); M424230 (203 views); M424180 (225 views); M424160 (236 views); M424163 (236 views); M424224 (241 views); M424154 (216 views); M424132 (241 views); M424169 (251 views); M424059 (439 views); M424228 (236 views); M424240 (244 views); M424208 (231 views); M424220 (227 views); M424197 (235 views); M424194 (230 views); M424149 (232 views); M424225 (228 views); M424211 (240 views); M424244 (207 views); M424161 (240 views); M424203 (228 views); M424234 (229 views); M424137 (232 views); M424171 (236 views); M424147 (225 views); M424153 (275 views); M424133 (238 views); M424187 (246 views); M424159 (233 views); M424226 (228 views); M424122 (236 views); M424141 (229 views); M424060 (436 views); M424190 (230 views); M424119 (360 views); M424164 (247 views); M424212 (229 views); M424192 (233 views); M424162 (234 views); M424201 (226 views); M424222 (235 views); M424130 (229 views); M424167 (240 views); M424165 (227 views); M424200 (236 views); M424202 (237 views); M424209 (239 views); M424207 (232 views); M424181 (230 views); M424138 (229 views); M424145 (255 views); M424223 (221 views); M424182 (235 views); M424238 (232 views); M424131 (233 views); M424100 (363 views); M424146 (261 views); M424158 (233 views); M424231 (225 views); M424151 (231 views); M424243 (235 views); M424204 (235 views); M424128 (234 views); M424144 (220 views); M424173 (228 views); M424236 (235 views); M424193 (230 views); M424227 (228 views); M424188 (228 views); M424217 (371 views); M424136 (235 views); M424139 (226 views); M424210 (235 views); M424124 (245 views); M424134 (227 views); M424126 (218 views); M424125 (238 views); M424184 (357 views); M424233 (228 views); M424273 (2 views); M424264 (2 views); M424268 (2 views); M424271 (1 view); M424274 (2 views); M424261 (1 view); M424248 (1 view); M424251 (8 views); M424259 (1 view); M424262 (1 view); M424270 (1 view); M424258 (1 view); M424256 (1 view); M424252 (2 views); M424250 (1 view); M424265 (1 view); M424272 (1 view); M424266 (3 views); M424247 (1 view); M424249 (2 views); M424255 (1 view); M424263 (1 view); M424254 (1 view); M424260 (1 view); M424257 (1 view); M424253 (1 view); M424269 (1 view); M424275 (1 view); M424267 (1 view);
    Matrix views1407Matrix landing page (1116 views); monocot floral characters for crowd sourcing (291 views);
    Project overview2323
    Taxon list7918
    Specimen list28664
    Views for media list2498
    Documents list1055
    Bibliography864




    Project downloads

    type number of downloads Individual items downloaded (where applicable)
    Total downloads from project222
    Project downloads216
    Document downloads2Supplementary Material (2 downloads);
    Matrix downloads3monocot floral characters for crowd sourcing (3 downloads);
    Media downloads1M424078 (1 download);