Project 3993: G. Verhaegen, E. Cimoli, D. Lindsay. 2021. Life beneath the ice: jellyfish and ctenophores from the Ross Sea, Antarctica, with an image-based training set for machine learning. Biodiversity Data Journal. 9:null.
Specimen: Diplulmaris antarctica Maas, 1908 (UTAS:MCMEC2019_Diplulmaris_antarctica_a)
View: apical

Abstract

Background
Southern Ocean ecosystems are currently experiencing increased environmental changes and anthropogenic pressures, urging scientists to report on their biodiversity and biogeography. Two major taxonomically diverse and trophically important gelatinous zooplankton groups that have, however, stayed largely understudied until now are the cnidarian jellyfish and ctenophores. This data scarcity is predominantly due to many of these fragile, soft-bodied organisms being easily fragmented and/or destroyed with traditional net sampling methods. Progress in alternative survey methods including, for instance, optics-based methods is slowly starting to overcome these obstacles. As video annotation by human observers is both time-consuming and financially costly, machine learning techniques should be developed for the analysis of in situ/in aqua image-based datasets. This requires taxonomically accurate training sets for correct species identification and the present paper is the first to provide such data.

New information
In this study, we twice conducted three week-long in situ optics-based surveys of jellyfish and ctenophores found under the ice in the McMurdo Sound, Antarctica. Our study constitutes the first optics-based survey of gelatinous zooplankton in the Ross Sea and the first study to use in situ/in aqua observations to describe taxonomic, and some trophic and behavioral characteristics of gelatinous zooplankton from the Southern Ocean. Despite the small geographic and temporal scales of our study, we provided new undescribed morphological traits for all observed gelatinous zooplankton species (eight cnidarian and four ctenophore species). Three ctenophores and one leptomedusa likely represent undescribed species. Furthermore, along with the photography and videography, we prepared a Common Objects in Context (COCO) dataset, so that this study is the first to provide a taxonomist-ratified image training set for future machine learning algorithm development concerning Southern Ocean gelatinous zooplankton species.



Read the article »

Article DOI: 10.3897/BDJ.9.e69374

Project DOI: 10.7934/P3993, http://dx.doi.org/10.7934/P3993
This project contains
  • 395 Media
  • 10 Taxa
  • 24 Specimens
Total size of project's media files: 2.66G

Download Project SDD File
Currently Viewing:
MorphoBank Project 3993
  • Creation Date:
    27 April 2021
  • Publication Date:
    14 August 2021
  • Project views: 49999

    Authors' Institutions

    • University of Tasmania

    • Japan Agency for Marine-Earth Science and Technology



    Members

    member name taxa specimens media
    Gerlien Verhaegen
    Project Administrator
    1024395


    Project has no matrices defined.



    Project views

    type number of views Individual items viewed (where applicable)
    Total project views49999
    Project overview850
    Media views37343Media search (1590 views); M740131 (240 views); M740132 (234 views); M740133 (241 views); M740134 (235 views); M740135 (238 views); M740136 (215 views); M740137 (220 views); M740138 (210 views); M740139 (209 views); M740140 (215 views); M740141 (210 views); M740142 (212 views); M740143 (215 views); M740144 (204 views); M740145 (213 views); M740146 (217 views); M740164 (212 views); M740165 (212 views); M740166 (208 views); M740167 (201 views); M740168 (210 views); M740169 (210 views); M740170 (210 views); M740171 (216 views); M740172 (209 views); M740173 (210 views); M740174 (205 views); M740175 (214 views); M740176 (197 views); M740177 (205 views); M740178 (215 views); M740179 (196 views); M740180 (197 views); M740181 (227 views); M740182 (227 views); M740183 (234 views); M740184 (221 views); M740185 (199 views); M740186 (203 views); M740187 (228 views); M740188 (230 views); M740189 (232 views); M740190 (196 views); M740191 (201 views); M740192 (198 views); M740193 (200 views); M740194 (195 views); M740195 (173 views); M740196 (175 views); M740197 (155 views); M740198 (172 views); M740199 (165 views); M740200 (164 views); M740201 (170 views); M740202 (142 views); M740203 (143 views); M740204 (154 views); M740205 (166 views); M740206 (165 views); M740207 (165 views); M740208 (147 views); M740209 (194 views); M740210 (163 views); M740211 (183 views); M740212 (162 views); M740213 (173 views); M740214 (162 views); M740215 (166 views); M740216 (167 views); M740217 (167 views); M740218 (150 views); M740219 (170 views); M740220 (150 views); M740393 (179 views); M740394 (156 views); M740395 (184 views); M740396 (187 views); M740397 (181 views); M740398 (190 views); M740399 (184 views); M740400 (190 views); M740401 (156 views); M740402 (183 views); M740403 (166 views); M740404 (196 views); M740405 (181 views); M740406 (186 views); M740407 (191 views); M740408 (191 views); M740409 (181 views); M740410 (179 views); M740411 (185 views); M740412 (180 views); M740413 (189 views); M740414 (187 views); M740415 (185 views); M740416 (186 views); M740417 (193 views); M740418 (194 views); M740419 (198 views); M740420 (127 views); M740421 (127 views); M740422 (130 views); M740423 (131 views); M740424 (128 views); M740425 (129 views); M740426 (136 views); M740427 (129 views); M740428 (129 views); M740429 (131 views); M740430 (129 views); M740431 (132 views); M740432 (132 views); M740433 (128 views); M740434 (129 views); M740435 (124 views); M740436 (133 views); M740437 (137 views); M740438 (138 views); M740439 (135 views); M740440 (132 views); M740441 (132 views); M740442 (132 views); M740443 (134 views); M740444 (133 views); M740445 (128 views); M740446 (135 views); M740447 (128 views); M740448 (129 views); M740449 (134 views); M740450 (135 views); M740451 (129 views); M740452 (130 views); M740453 (127 views); M740454 (137 views); M740455 (143 views); M740456 (128 views); M740457 (118 views); M740458 (116 views); M740459 (113 views); M740460 (149 views); M740461 (123 views); M740462 (150 views); M740463 (129 views); M740464 (132 views); M740465 (133 views); M740466 (128 views); M740467 (151 views); M740468 (135 views); M740469 (128 views); M740470 (131 views); M740471 (127 views); M740472 (137 views); M740473 (131 views); M740474 (142 views); M740475 (134 views); M740476 (150 views); M740477 (130 views); M740478 (117 views); M740479 (109 views); M740480 (135 views); M740481 (130 views); M740482 (137 views); M740483 (132 views); M740484 (129 views); M740485 (129 views); M740486 (133 views); M740487 (129 views); M740488 (126 views); M740489 (131 views); M740490 (130 views); M740491 (137 views); M740492 (174 views); M740493 (139 views); M740494 (131 views); M740495 (129 views); M740496 (128 views); M740497 (129 views); M740498 (135 views); M740499 (131 views); M740500 (142 views); M740501 (128 views); M740502 (133 views); M740503 (132 views); M740504 (136 views); M740505 (138 views); M740506 (130 views); M740507 (128 views); M740508 (131 views); M740509 (130 views); M740510 (135 views); M740511 (131 views); M740512 (132 views); M740513 (154 views); M740514 (135 views); M740515 (139 views); M740516 (132 views); M740517 (132 views); M740518 (128 views); M740519 (131 views); M740520 (128 views); M740521 (127 views); M740522 (128 views); M740523 (134 views); M740524 (130 views); M740525 (129 views); M740526 (129 views); M740527 (135 views); M740528 (127 views); M740529 (131 views); M740530 (130 views); M740531 (127 views); M740532 (127 views); M740533 (131 views); M740534 (135 views); M740535 (129 views); M740536 (131 views); M740537 (127 views); M740538 (127 views); M740539 (128 views); M740540 (136 views); M740541 (148 views); M740542 (129 views); M740543 (124 views); M740544 (131 views); M740566 (1 view); M740573 (2 views); M740982 (1 view);
    Bibliography389
    Views for media list1444
    Specimen list7363
    Taxon list2604
    Documents list6




    Project downloads

    type number of downloads Individual items downloaded (where applicable)
    Total downloads from project43
    Project downloads43