Project 657: Weksler, M. 2006. Phylogenetic relationships of oryzomine rodents (Muroidea, Sigmodontinae) : separate and combined analyses of morphological and molecular data. Bulletin of the American Museum of Natural History. 296:1-149.
Abstract
In this study I provide a phylogenetic hypothesis for the tribe Oryzomyini that can be used to understand the diversification and evolution of this group of rodents and to revise the current generic-level classification. Morphological and molecular data were used for these purposes in combined and separate analyses. Molecular data consisted of partial sequences (1266 bp) from the first exon of the nuclear gene encoding the interphotoreceptor retinoid binding protein (IRBP); the morphological matrix comprised 99 characters, including 16 integumental characters, 32 skull characters, 29 dental characters, 7 postcranial characters, and 10 characters from the phallus and soft-anatomy systems. I present anatomical descriptions for each character, including delineation of different states observed among oryzomyines. Results of the combined analysis were congruent with the IRBP-only dataset for oryzomyine higher-level relationships. Morphological analyses, although showing discrepancies from the combined or IRBP consensus cladograms and with low nodal support values, recovered several clades similar to the combined and IRBP analyses. Systematics of the tribe and the evolution of a few pivotal characters are discussed in light of the proposed phylogeny. Different taxonomic arrangements for species currently included in the genus Oryzomys are suggested. Finally, I evaluate evolutionary and biogeographic hypotheses that are compatible with our current knowledge on oryzomyine relationships.Read the article »
| This project contains | Matrices |
|---|---|
| Total scored cells: 4812 Total media associated with cells: 0 Total labels associated with cell media: 0 |
| Characters | |
| Total characters: 99 Total characters with associated media: 39 Total character states: 242 Total character states with associated media: 2 |
Currently Viewing:
MorphoBank Project 657
MorphoBank Project 657
- Creation Date:
07 December 2007 - Publication Date:
06 July 2011
Members
| member name | taxa | specimens | media | media notes | chars | character comms notes media labels | cell scorings (scored, NPA, "-") | cell notes media labels | rules | |||||
| Natalie Milbrodt Project Administrator Last logged in 02/02/12 | 17 | 2 | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 4812 (4812, 0, 0) | 0 | 0 | 0 | 0 |
| Maureen Admin Full membership (can edit everything) Last logged in 01/30/12 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 |
| Marcelo Weksler Full membership (can edit everything) Last logged in 01/26/12 | 95 | 11 | 32 | 0 | 98 | 0 | 98 | 44 | 7 | 0 (0, 0, 0) | 0 | 0 | 0 | 0 |
Taxonomic Overview for Matrix 'M1488' (54 Taxa)
| taxon | unscored cells |
scored cells |
NPA cells |
"-" cells | cell images | labels attached to cell images |
project members with access |
| [1] Nyctomys sumichrasti Last Modified in 12/16/11 | 3 | 96 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [2] Peromyscus maniculatus Last Modified in 12/16/11 | 10 | 89 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [3] Delomys sublineatus Last Modified in 12/16/11 | 13 | 86 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [4] Thomasomys baeops Last Modified in 12/16/11 | 3 | 98 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [5] Wiedomys pyrrhorhinos Last Modified in 12/16/11 | 12 | 88 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [6] Amphinectomys savamis Last Modified in 12/16/11 | 67 | 32 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [7] Handleyomys intectus Last Modified in 12/16/11 | 16 | 85 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [8] Holochilus brasiliensis Last Modified in 12/16/11 | 1 | 99 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [9] Holochilus chacarius Last Modified in 12/16/11 | 22 | 77 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [10] Lundomys molitor Last Modified in 12/16/11 | 9 | 91 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [11] Melanomys caliginosus Last Modified in 12/16/11 | 1 | 99 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [12] Microryzomys minutus Last Modified in 12/16/11 | 3 | 96 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [13] Neacomys minutus Last Modified in 12/16/11 | 22 | 77 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [14] Neacomys musseri Last Modified in 12/16/11 | 16 | 83 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [15] Neacomys spinosus Last Modified in 12/16/11 | 1 | 99 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [16] Nectomys apicalis Last Modified in 12/16/11 | 15 | 84 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [17] Nectomys squamipes Last Modified in 12/16/11 | 5 | 95 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [18] Nesoryzomys narboroughi Last Modified in 12/16/11 | 5 | 94 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [19] Nesoryzomys swarthi Last Modified in 12/16/11 | 37 | 62 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [20] Oecomys bicolor Last Modified in 12/16/11 | 8 | 94 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [21] Oecomys catherinae Last Modified in 12/16/11 | 23 | 76 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [22] Oecomys concolor Last Modified in 12/16/11 | 1 | 100 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [23] Oecomys mamorae Last Modified in 12/16/11 | 10 | 90 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [24] Oecomys trinitatis Last Modified in 12/16/11 | 12 | 90 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [25] Oligoryzomys flavescens Last Modified in 12/16/11 | 11 | 88 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [26] Oligoryzomys fornesi Last Modified in 12/16/11 | 21 | 78 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [27] Oligoryzomys fulvescens Last Modified in 12/16/11 | 1 | 98 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [28] Oligoryzomys nigripes Last Modified in 12/16/11 | 8 | 92 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [29] Oligoryzomys stramineus Last Modified in 12/16/11 | 23 | 76 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [30] Oryzomys albigularis Last Modified in 12/16/11 | 9 | 93 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [31] Oryzomys alfaroi Last Modified in 12/16/11 | 7 | 95 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [32] Oryzomys angouya Last Modified in 12/16/11 | 2 | 100 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [33] Oryzomys balneator Last Modified in 12/16/11 | 16 | 83 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [34] Oryzomys chapmani Last Modified in 12/16/11 | 10 | 92 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [35] Oryzomys couesi Last Modified in 12/16/11 | 10 | 89 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [36] Oryzomys hammondi Last Modified in 12/16/11 | 23 | 76 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [37] Oryzomys lamia Last Modified in 12/16/11 | 22 | 78 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [38] Oryzomys levipes Last Modified in 12/16/11 | 10 | 91 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [39] Oryzomys macconnelli Last Modified in 12/16/11 | 8 | 93 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [40] Oryzomys megacephalus Last Modified in 12/16/11 | 0 | 101 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [41] Oryzomys melanotis Last Modified in 12/16/11 | 1 | 100 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [42] Oryzomys palustris Last Modified in 12/16/11 | 0 | 101 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [43] Oryzomys polius Last Modified in 12/16/11 | 22 | 77 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [44] Oryzomys russatus Last Modified in 12/16/11 | 14 | 86 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [45] Oryzomys subflavus Last Modified in 12/16/11 | 8 | 96 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [46] Oryzomys talamancae Last Modified in 12/16/11 | 1 | 101 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [47] Oryzomys xanthaeolus Last Modified in 12/16/11 | 9 | 95 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [48] Oryzomys yunganus Last Modified in 12/16/11 | 11 | 89 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [49] Pseudoryzomys simplex Last Modified in 12/16/11 | 9 | 91 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [50] Scolomys ucayalensis Last Modified in 12/16/11 | 9 | 90 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [51] Sigmodontomys alfari Last Modified in 12/16/11 | 2 | 101 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [52] Sigmodontomys aphrastus Last Modified in 12/16/11 | 22 | 78 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [53] Zygodontomys brevicauda Last Modified in 12/16/11 | 1 | 103 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |
| [54] Zygodontomys cherriei Last Modified in 12/16/11 | 1 | 101 | 0 | 0 | 0 | 0 | Maureen Admin, Natalie Milbrodt, Marcelo Weksler |

